J5_7ABZ_008

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ABZ|1|2|C|36
7ABZ|1|2|U|37
7ABZ|1|2|G|38
7ABZ|1|2|G|39
*
7ABZ|1|2|C|403
7ABZ|1|2|G|404
7ABZ|1|2|U|405
7ABZ|1|2|G|406
*
7ABZ|1|2|C|436
7ABZ|1|2|U|437
7ABZ|1|2|U|438
7ABZ|1|2|U|439
7ABZ|1|2|C|440
7ABZ|1|2|A|441
7ABZ|1|2|G|442
*
7ABZ|1|2|C|492
7ABZ|1|2|A|493
7ABZ|1|2|G|494
7ABZ|1|2|A|495
7ABZ|1|2|A|496
7ABZ|1|2|G|497
7ABZ|1|2|A|498
7ABZ|1|2|A|499
7ABZ|1|2|G|500
*
7ABZ|1|2|C|545
7ABZ|1|2|A|546
7ABZ|1|2|A|547
7ABZ|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12