J5_7ACJ_002

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ACJ|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ACJ_002 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0939

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ACJ|1|1|C|47
7ACJ|1|1|G|48
7ACJ|1|1|A|49
7ACJ|1|1|U|50
7ACJ|1|1|G|51
7ACJ|1|1|A|52
7ACJ|1|1|A|53
7ACJ|1|1|G|54
*
7ACJ|1|1|C|116
7ACJ|1|1|G|117
7ACJ|1|1|A|118
7ACJ|1|1|A|119
7ACJ|1|1|U|120
7ACJ|1|1|G|121
*
7ACJ|1|1|C|130
7ACJ|1|1|A|131
*
7ACJ|1|1|U|148
7ACJ|1|1|A|149
7ACJ|1|1|U|150
*
7ACJ|1|1|A|176
7ACJ|1|1|G|177
7ACJ|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34