J5_7AJT_002

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGUCU*AUAAAUAACG*UGGAAUGAG*CGAGGAACAAUUGG*CCAAUAG

Length

47 nucleotides

Bulged bases

7AJT|1|D3|A|541, 7AJT|1|D3|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|C|31
7AJT|1|D3|U|32
7AJT|1|D3|U|33
7AJT|1|D3|G|34
7AJT|1|D3|U|35
7AJT|1|D3|C|36
7AJT|1|D3|U|37
*
7AJT|1|D3|A|471
7AJT|1|D3|U|472
7AJT|1|D3|A|473
7AJT|1|D3|A|474
7AJT|1|D3|A|475
7AJT|1|D3|U|476
7AJT|1|D3|A|477
7AJT|1|D3|A|478
7AJT|1|D3|C|479
7AJT|1|D3|G|480
*
7AJT|1|D3|U|508
7AJT|1|D3|G|509
7AJT|1|D3|G|510
7AJT|1|D3|A|511
7AJT|1|D3|A|512
7AJT|1|D3|U|513
7AJT|1|D3|G|514
7AJT|1|D3|A|515
7AJT|1|D3|G|516
*
7AJT|1|D3|C|536
7AJT|1|D3|G|537
7AJT|1|D3|A|538
7AJT|1|D3|G|539
7AJT|1|D3|G|540
7AJT|1|D3|A|541
7AJT|1|D3|A|542
7AJT|1|D3|C|543
7AJT|1|D3|A|544
7AJT|1|D3|A|545
7AJT|1|D3|U|546
7AJT|1|D3|U|547
7AJT|1|D3|G|548
7AJT|1|D3|G|549
*
7AJT|1|D3|C|589
7AJT|1|D3|C|590
7AJT|1|D3|A|591
7AJT|1|D3|A|592
7AJT|1|D3|U|593
7AJT|1|D3|A|594
7AJT|1|D3|G|595

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CH

Ribosomal RNA-processing protein 9

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain DY

40S ribosomal protein S24-A

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11