J5_7AJU_001

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJU|1|D3|C|31
7AJU|1|D3|U|32
7AJU|1|D3|U|33
7AJU|1|D3|G|34
7AJU|1|D3|U|35
*
7AJU|1|D3|A|473
7AJU|1|D3|A|474
7AJU|1|D3|A|475
7AJU|1|D3|U|476
7AJU|1|D3|A|477
7AJU|1|D3|A|478
7AJU|1|D3|C|479
*
7AJU|1|D3|G|509
7AJU|1|D3|G|510
7AJU|1|D3|A|511
7AJU|1|D3|A|512
7AJU|1|D3|U|513
7AJU|1|D3|G|514
7AJU|1|D3|A|515
7AJU|1|D3|G|516
*
7AJU|1|D3|C|536
7AJU|1|D3|G|537
7AJU|1|D3|A|538
7AJU|1|D3|G|539
7AJU|1|D3|G|540
7AJU|1|D3|A|541
7AJU|1|D3|A|542
7AJU|1|D3|C|543
7AJU|1|D3|A|544
7AJU|1|D3|A|545
7AJU|1|D3|U|546
*
7AJU|1|D3|A|592
7AJU|1|D3|U|593
7AJU|1|D3|A|594
7AJU|1|D3|G|595

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CH

Ribosomal RNA-processing protein 9

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain UC

Something about silencing protein 10