J5_7AQD_002

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

7AQD|1|A|U|301, 7AQD|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AQD|1|A|C|271
7AQD|1|A|C|272
7AQD|1|A|A|273
7AQD|1|A|A|274
7AQD|1|A|A|275
7AQD|1|A|C|276
*
7AQD|1|A|G|295
7AQD|1|A|G|296
7AQD|1|A|G|297
7AQD|1|A|U|298
7AQD|1|A|U|299
7AQD|1|A|G|300
7AQD|1|A|U|301
7AQD|1|A|A|302
*
7AQD|1|A|U|416
7AQD|1|A|G|417
7AQD|1|A|A|418
7AQD|1|A|G|419
7AQD|1|A|U|420
7AQD|1|A|A|421
7AQD|1|A|C|422
*
7AQD|1|A|G|446
7AQD|1|A|G|447
7AQD|1|A|A|448
7AQD|1|A|A|449
7AQD|1|A|U|450
7AQD|1|A|C|451
7AQD|1|A|C|452
7AQD|1|A|G|453
*
7AQD|1|A|C|468
7AQD|1|A|A|469
7AQD|1|A|A|470
7AQD|1|A|G|471

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28