J5_7AQD_004
3D structure
- PDB id
- 7AQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial RQC complex (Translocating State)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7AQD|1|A|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AQD_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1074
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7AQD|1|A|C|628
7AQD|1|A|G|629
7AQD|1|A|A|630
7AQD|1|A|G|631
7AQD|1|A|U|632
7AQD|1|A|U|633
*
7AQD|1|A|A|715
7AQD|1|A|G|716
7AQD|1|A|A|717
7AQD|1|A|C|718
*
7AQD|1|A|G|856
7AQD|1|A|U|857
7AQD|1|A|U|858
7AQD|1|A|C|859
*
7AQD|1|A|G|1236
7AQD|1|A|C|1237
*
7AQD|1|A|G|1290
7AQD|1|A|A|1291
7AQD|1|A|G|1292
7AQD|1|A|A|1293
7AQD|1|A|A|1294
7AQD|1|A|U|1295
7AQD|1|A|G|1296
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain e
- 50S ribosomal protein L35
- Chain g
- 50S ribosomal protein L21
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