J5_7AQD_006

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

7AQD|1|A|A|2477, 7AQD|1|A|U|2478, 7AQD|1|A|U|2638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AQD|1|A|G|2086
7AQD|1|A|A|2087
7AQD|1|A|A|2088
7AQD|1|A|A|2089
7AQD|1|A|G|2090
7AQD|1|A|A|2091
7AQD|1|A|C|2092
7AQD|1|A|C|2093
*
7AQD|1|A|G|2475
7AQD|1|A|G|2476
7AQD|1|A|A|2477
7AQD|1|A|U|2478
7AQD|1|A|A|2479
7AQD|1|A|A|2480
7AQD|1|A|C|2481
7AQD|1|A|A|2482
*
7AQD|1|A|U|2529
7AQD|1|A|C|2530
7AQD|1|A|G|2531
7AQD|1|A|A|2532
7AQD|1|A|U|2533
7AQD|1|A|G|2534
7AQD|1|A|U|2535
7AQD|1|A|C|2536
*
7AQD|1|A|G|2611
7AQD|1|A|G|2612
7AQD|1|A|U|2613
7AQD|1|A|U|2614
7AQD|1|A|C|2615
7AQD|1|A|A|2616
7AQD|1|A|G|2617
*
7AQD|1|A|C|2635
7AQD|1|A|G|2636
7AQD|1|A|G|2637
7AQD|1|A|U|2638
7AQD|1|A|C|2639
7AQD|1|A|C|2640

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain T

Transfer RNA; tRNA

Chain W

nascent polyalanine

Chain b

50S ribosomal protein L32