J5_7AS8_005

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

7AS8|1|A|G|1787, 7AS8|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AS8_005 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1128

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|G|1719
7AS8|1|A|C|1720
7AS8|1|A|A|1721
7AS8|1|A|A|1722
7AS8|1|A|A|1723
7AS8|1|A|A|1724
7AS8|1|A|U|1725
7AS8|1|A|G|1726
7AS8|1|A|A|1727
*
7AS8|1|A|U|1751
7AS8|1|A|G|1752
*
7AS8|1|A|C|1780
7AS8|1|A|C|1781
*
7AS8|1|A|G|1785
7AS8|1|A|U|1786
7AS8|1|A|G|1787
7AS8|1|A|A|1788
7AS8|1|A|A|1789
7AS8|1|A|U|1790
7AS8|1|A|A|1791
7AS8|1|A|G|1792
7AS8|1|A|G|1793
*
7AS8|1|A|C|2017
7AS8|1|A|A|2018
7AS8|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain O

50S ribosomal protein L14

Chain T

50S ribosomal protein L19