J5_7ASM_004
3D structure
- PDB id
- 7ASM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 50S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ASM|1|A|G|1785, 7ASM|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ASM_004 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.083
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7ASM|1|A|G|1718
7ASM|1|A|C|1719
7ASM|1|A|A|1720
7ASM|1|A|A|1721
7ASM|1|A|A|1722
7ASM|1|A|A|1723
7ASM|1|A|U|1724
7ASM|1|A|G|1725
7ASM|1|A|A|1726
*
7ASM|1|A|U|1750
7ASM|1|A|G|1751
*
7ASM|1|A|C|1778
7ASM|1|A|C|1779
*
7ASM|1|A|G|1783
7ASM|1|A|U|1784
7ASM|1|A|G|1785
7ASM|1|A|A|1786
7ASM|1|A|A|1787
7ASM|1|A|U|1788
7ASM|1|A|A|1789
7ASM|1|A|G|1790
7ASM|1|A|G|1791
*
7ASM|1|A|C|2015
7ASM|1|A|A|2016
7ASM|1|A|C|2017
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
- Chain N
- 50S ribosomal protein L19
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