J5_7ASN_002

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7ASN|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ASN_002 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1064

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ASN|1|A|C|47
7ASN|1|A|G|48
7ASN|1|A|A|49
7ASN|1|A|U|50
7ASN|1|A|G|51
7ASN|1|A|A|52
7ASN|1|A|A|53
7ASN|1|A|G|54
*
7ASN|1|A|C|115
7ASN|1|A|G|116
7ASN|1|A|A|117
7ASN|1|A|A|118
7ASN|1|A|U|119
7ASN|1|A|G|120
*
7ASN|1|A|C|129
7ASN|1|A|A|130
*
7ASN|1|A|U|149
7ASN|1|A|A|150
7ASN|1|A|U|151
*
7ASN|1|A|A|178
7ASN|1|A|A|179
7ASN|1|A|G|180

Current chains

Chain A

23S

Nearby chains

Chain 2

50S ribosomal protein L34