J5_7ASP_005
3D structure
- PDB id
- 7ASP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 50 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ASP|1|Y|G|1785, 7ASP|1|Y|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ASP_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1489
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ASP|1|Y|G|1718
7ASP|1|Y|C|1719
7ASP|1|Y|A|1720
7ASP|1|Y|A|1721
7ASP|1|Y|A|1722
7ASP|1|Y|A|1723
7ASP|1|Y|U|1724
7ASP|1|Y|G|1725
7ASP|1|Y|A|1726
*
7ASP|1|Y|U|1750
7ASP|1|Y|G|1751
*
7ASP|1|Y|C|1778
7ASP|1|Y|C|1779
*
7ASP|1|Y|G|1783
7ASP|1|Y|U|1784
7ASP|1|Y|G|1785
7ASP|1|Y|A|1786
7ASP|1|Y|A|1787
7ASP|1|Y|U|1788
7ASP|1|Y|A|1789
7ASP|1|Y|G|1790
7ASP|1|Y|G|1791
*
7ASP|1|Y|C|2015
7ASP|1|Y|A|2016
7ASP|1|Y|C|2017
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
- Chain N
- 50S ribosomal protein L19
- Chain X
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: