J5_7AZO_010
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 7AZO|1|23SA|G|1792, 7AZO|1|23SA|G|1797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AZO_010 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0869
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7AZO|1|23SA|G|1724
7AZO|1|23SA|C|1725
7AZO|1|23SA|A|1726
7AZO|1|23SA|A|1727
7AZO|1|23SA|G|1728
7AZO|1|23SA|U|1729
7AZO|1|23SA|U|1730
7AZO|1|23SA|G|1731
7AZO|1|23SA|G|1732
*
7AZO|1|23SA|U|1756
7AZO|1|23SA|G|1757
*
7AZO|1|23SA|C|1785
7AZO|1|23SA|C|1786
*
7AZO|1|23SA|G|1790
7AZO|1|23SA|U|1791
7AZO|1|23SA|G|1792
7AZO|1|23SA|A|1793
7AZO|1|23SA|A|1794
7AZO|1|23SA|C|1795
7AZO|1|23SA|A|1796
7AZO|1|23SA|G|1797
7AZO|1|23SA|G|1798
*
7AZO|1|23SA|C|2013
7AZO|1|23SA|G|2014
7AZO|1|23SA|C|2015
Current chains
- Chain 23SA
- 23S rRNA
Nearby chains
- Chain 16SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain L14A
- 50S ribosomal protein L14
- Chain L19A
- 50S ribosomal protein L19
- Chain L3A
- 50S ribosomal protein L3
Coloring options: