J5_7AZS_001

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AZS_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0754

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7AZS|1|16SA|C|682
7AZS|1|16SA|U|683
7AZS|1|16SA|G|684
7AZS|1|16SA|G|685
*
7AZS|1|16SA|C|1044
7AZS|1|16SA|U|1045
7AZS|1|16SA|U|1046
7AZS|1|16SA|G|1047
*
7AZS|1|16SA|C|1077
7AZS|1|16SA|U|1078
7AZS|1|16SA|G|1079
7AZS|1|16SA|A|1080
7AZS|1|16SA|A|1081
7AZS|1|16SA|C|1082
*
7AZS|1|16SA|G|1122
7AZS|1|16SA|G|1123
7AZS|1|16SA|U|1124
7AZS|1|16SA|A|1125
7AZS|1|16SA|A|1126
7AZS|1|16SA|U|1127
7AZS|1|16SA|A|1128
7AZS|1|16SA|G|1129
*
7AZS|1|16SA|C|1174
7AZS|1|16SA|G|1175
7AZS|1|16SA|A|1176
7AZS|1|16SA|G|1177

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain L9B

50S ribosomal protein L9

Chain S12A

30S ribosomal protein S12

Chain S4A

30S ribosomal protein S4