J5_7AZS_005

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7AZS|1|23SA|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AZS_005 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0658

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7AZS|1|23SA|C|46
7AZS|1|23SA|G|47
7AZS|1|23SA|A|48
7AZS|1|23SA|U|49
7AZS|1|23SA|G|50
7AZS|1|23SA|A|51
7AZS|1|23SA|A|52
7AZS|1|23SA|G|53
*
7AZS|1|23SA|C|114
7AZS|1|23SA|G|115
7AZS|1|23SA|A|116
7AZS|1|23SA|A|117
7AZS|1|23SA|U|118
7AZS|1|23SA|G|119
*
7AZS|1|23SA|C|128
7AZS|1|23SA|G|129
*
7AZS|1|23SA|C|148
7AZS|1|23SA|A|149
7AZS|1|23SA|C|150
*
7AZS|1|23SA|G|166
7AZS|1|23SA|G|167
7AZS|1|23SA|G|168

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L23A

50S ribosomal protein L23

Chain L34A

50S ribosomal protein L34