J5_7AZS_016
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7AZS|1|23SB|U|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AZS_016 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0666
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7AZS|1|23SB|C|609
7AZS|1|23SB|G|610
7AZS|1|23SB|A|611
7AZS|1|23SB|C|612
7AZS|1|23SB|U|613
7AZS|1|23SB|C|614
*
7AZS|1|23SB|G|717
7AZS|1|23SB|G|718
7AZS|1|23SB|A|719
7AZS|1|23SB|C|720
*
7AZS|1|23SB|G|858
7AZS|1|23SB|U|859
7AZS|1|23SB|U|860
7AZS|1|23SB|C|861
*
7AZS|1|23SB|G|1243
7AZS|1|23SB|C|1244
*
7AZS|1|23SB|G|1299
7AZS|1|23SB|C|1300
7AZS|1|23SB|G|1301
7AZS|1|23SB|A|1302
7AZS|1|23SB|A|1303
7AZS|1|23SB|U|1304
7AZS|1|23SB|G|1305
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain L15B
- 50S ribosomal protein L15
- Chain L20B
- 50S ribosomal protein L20
- Chain L21B
- 50S ribosomal protein L21
- Chain L35B
- 50S ribosomal protein L35
- Chain L4B
- 50S ribosomal protein L4
Coloring options: