J5_7AZS_019
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7AZS|1|23SB|U|2101, 7AZS|1|23SB|G|2443, 7AZS|1|23SB|G|2444, 7AZS|1|23SB|A|2445, 7AZS|1|23SB|U|2446, 7AZS|1|23SB|A|2449
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AZS_019 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.079
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AZS|1|23SB|U|2099
7AZS|1|23SB|U|2100
7AZS|1|23SB|U|2101
7AZS|1|23SB|A|2102
*
7AZS|1|23SB|U|2258
7AZS|1|23SB|U|2259
7AZS|1|23SB|U|2260
7AZS|1|23SB|G|2261
*
7AZS|1|23SB|C|2273
7AZS|1|23SB|G|2274
*
7AZS|1|23SB|C|2296
7AZS|1|23SB|G|2297
*
7AZS|1|23SB|C|2442
7AZS|1|23SB|G|2443
7AZS|1|23SB|G|2444
7AZS|1|23SB|A|2445
7AZS|1|23SB|U|2446
7AZS|1|23SB|A|2447
7AZS|1|23SB|A|2448
7AZS|1|23SB|A|2449
7AZS|1|23SB|A|2450
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain ESIB
- Transfer RNA; tRNA
- Chain L15B
- 50S ribosomal protein L15
- Chain L27B
- 50S ribosomal protein L27
- Chain L28B
- 50S ribosomal protein L28
- Chain L2B
- 50S ribosomal protein L2
- Chain L35B
- 50S ribosomal protein L35
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