J5_7B7D_008
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7B7D|1|LA|U|719, 7B7D|1|LA|A|784, 7B7D|1|LA|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7B7D_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0807
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7B7D|1|LA|C|675
7B7D|1|LA|G|676
7B7D|1|LA|A|677
7B7D|1|LA|G|678
*
7B7D|1|LA|C|702
7B7D|1|LA|G|703
7B7D|1|LA|U|704
7B7D|1|LA|A|705
7B7D|1|LA|A|706
*
7B7D|1|LA|U|713
7B7D|1|LA|G|714
7B7D|1|LA|A|715
7B7D|1|LA|A|716
7B7D|1|LA|C|717
7B7D|1|LA|G|718
7B7D|1|LA|U|719
7B7D|1|LA|A|720
7B7D|1|LA|G|721
*
7B7D|1|LA|C|749
7B7D|1|LA|G|750
7B7D|1|LA|A|751
*
7B7D|1|LA|U|782
7B7D|1|LA|A|783
7B7D|1|LA|A|784
7B7D|1|LA|G|785
7B7D|1|LA|A|786
7B7D|1|LA|G|787
Current chains
- Chain LA
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LW
- 60S ribosomal protein L28
- Chain LX
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L36-A
- Chain Lm
- 60S ribosomal protein L18-A
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