J5_7BHP_003

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

7BHP|1|L5|G|3620, 7BHP|1|L5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BHP_003 not in the Motif Atlas

Homologous match to J5_8C3A_004

Geometric discrepancy: 0.1147

The information below is about J5_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|G|2855
7BHP|1|L5|C|2856
7BHP|1|L5|A|2857
7BHP|1|L5|A|2858
7BHP|1|L5|G|2859
7BHP|1|L5|C|2860
7BHP|1|L5|C|2861
7BHP|1|L5|G|2862
7BHP|1|L5|G|2863
*
7BHP|1|L5|U|2887
7BHP|1|L5|G|2888
*
7BHP|1|L5|U|3613
7BHP|1|L5|G|3614
*
7BHP|1|L5|C|3618
7BHP|1|L5|G|3619
7BHP|1|L5|G|3620
7BHP|1|L5|A|3621
7BHP|1|L5|C|3622
7BHP|1|L5|C|3623
7BHP|1|L5|A|3624
7BHP|1|L5|G|3625
7BHP|1|L5|G|3626
*
7BHP|1|L5|C|3835
7BHP|1|L5|A|3836
7BHP|1|L5|C|3837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LR

60S ribosomal protein L19

Chain LW

60S ribosomal protein L24