J5_7BHP_004

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

7BHP|1|L5|A|3908, 7BHP|1|L5|A|4394, 7BHP|1|L5|U|4395, 7BHP|1|L5|U|4452, 7BHP|1|L5|U|4531, 7BHP|1|L5|U|4555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|A|3903
7BHP|1|L5|G|3904
7BHP|1|L5|A|3905
7BHP|1|L5|A|3906
7BHP|1|L5|G|3907
7BHP|1|L5|A|3908
7BHP|1|L5|C|3909
7BHP|1|L5|C|3910
*
7BHP|1|L5|G|4392
7BHP|1|L5|G|4393
7BHP|1|L5|A|4394
7BHP|1|L5|U|4395
7BHP|1|L5|A|4396
7BHP|1|L5|A|4397
7BHP|1|L5|C|4398
7BHP|1|L5|U|4399
7BHP|1|L5|G|4400
*
7BHP|1|L5|C|4444
7BHP|1|L5|U|4445
7BHP|1|L5|U|4446
7BHP|1|L5|C|4447
7BHP|1|L5|G|4448
7BHP|1|L5|A|4449
7BHP|1|L5|U|4450
7BHP|1|L5|G|4451
7BHP|1|L5|U|4452
7BHP|1|L5|C|4453
*
7BHP|1|L5|G|4528
7BHP|1|L5|G|4529
7BHP|1|L5|U|4530
7BHP|1|L5|U|4531
7BHP|1|L5|U|4532
7BHP|1|L5|A|4533
7BHP|1|L5|G|4534
*
7BHP|1|L5|U|4552
7BHP|1|L5|A|4553
7BHP|1|L5|G|4554
7BHP|1|L5|U|4555
7BHP|1|L5|U|4556
7BHP|1|L5|U|4557

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L29