J5_7BL4_004

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7BL4|1|A|U|1758, 7BL4|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BL4_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0896

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BL4|1|A|G|1674
7BL4|1|A|C|1675
7BL4|1|A|A|1676
7BL4|1|A|A|1677
7BL4|1|A|A|1678
7BL4|1|A|A|1679
7BL4|1|A|U|1680
7BL4|1|A|G|1681
7BL4|1|A|G|1682
*
7BL4|1|A|C|1706
7BL4|1|A|G|1707
*
7BL4|1|A|U|1751
7BL4|1|A|C|1752
*
7BL4|1|A|G|1756
7BL4|1|A|A|1757
7BL4|1|A|U|1758
7BL4|1|A|A|1759
7BL4|1|A|C|1760
7BL4|1|A|C|1761
7BL4|1|A|A|1762
7BL4|1|A|G|1763
7BL4|1|A|C|1764
*
7BL4|1|A|G|1988
7BL4|1|A|G|1989
7BL4|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19