J5_7BL6_001

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7BL6|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BL6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1081

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7BL6|1|A|C|47
7BL6|1|A|G|48
7BL6|1|A|A|49
7BL6|1|A|U|50
7BL6|1|A|G|51
7BL6|1|A|A|52
7BL6|1|A|A|53
7BL6|1|A|G|54
*
7BL6|1|A|C|116
7BL6|1|A|G|117
7BL6|1|A|A|118
7BL6|1|A|A|119
7BL6|1|A|U|120
7BL6|1|A|G|121
*
7BL6|1|A|C|130
7BL6|1|A|A|131
*
7BL6|1|A|U|148
7BL6|1|A|A|149
7BL6|1|A|U|150
*
7BL6|1|A|A|176
7BL6|1|A|G|177
7BL6|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34