J5_7BT6_001

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

AGG*CGAUGAAG*UGAACGC*GCG*CAU

Length

24 nucleotides

Bulged bases

7BT6|1|2|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BT6|1|1|A|20
7BT6|1|1|G|21
7BT6|1|1|G|22
*
7BT6|1|2|C|35
7BT6|1|2|G|36
7BT6|1|2|A|37
7BT6|1|2|U|38
7BT6|1|2|G|39
7BT6|1|2|A|40
7BT6|1|2|A|41
7BT6|1|2|G|42
*
7BT6|1|2|U|102
7BT6|1|2|G|103
7BT6|1|2|A|104
7BT6|1|2|A|105
7BT6|1|2|C|106
7BT6|1|2|G|107
7BT6|1|2|C|108
*
7BT6|1|2|G|114
7BT6|1|2|C|115
7BT6|1|2|G|116
*
7BT6|1|2|C|137
7BT6|1|2|A|138
7BT6|1|2|U|139

Current chains

Chain 1

RDN25-1 rRNA

Chain 2

RDN5.8-1 rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A