J5_7BT6_002

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UCAAAUUUGAAA*UAAUUUGGAGAGGG*CUUCGAAGAGUCG*CUAAGUG*UAAA

Length

50 nucleotides

Bulged bases

7BT6|1|1|U|117, 7BT6|1|1|G|120, 7BT6|1|1|A|121, 7BT6|1|1|G|156, 7BT6|1|1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BT6|1|1|U|112
7BT6|1|1|C|113
7BT6|1|1|A|114
7BT6|1|1|A|115
7BT6|1|1|A|116
7BT6|1|1|U|117
7BT6|1|1|U|118
7BT6|1|1|U|119
7BT6|1|1|G|120
7BT6|1|1|A|121
7BT6|1|1|A|122
7BT6|1|1|A|123
*
7BT6|1|1|U|149
7BT6|1|1|A|150
7BT6|1|1|A|151
7BT6|1|1|U|152
7BT6|1|1|U|153
7BT6|1|1|U|154
7BT6|1|1|G|155
7BT6|1|1|G|156
7BT6|1|1|A|157
7BT6|1|1|G|158
7BT6|1|1|A|159
7BT6|1|1|G|160
7BT6|1|1|G|161
7BT6|1|1|G|162
*
7BT6|1|1|C|260
7BT6|1|1|U|261
7BT6|1|1|U|262
7BT6|1|1|C|263
7BT6|1|1|G|264
7BT6|1|1|A|265
7BT6|1|1|A|266
7BT6|1|1|G|267
7BT6|1|1|A|268
7BT6|1|1|G|269
7BT6|1|1|U|270
7BT6|1|1|C|271
7BT6|1|1|G|272
*
7BT6|1|1|C|293
7BT6|1|1|U|294
7BT6|1|1|A|295
7BT6|1|1|A|296
7BT6|1|1|G|297
7BT6|1|1|U|298
7BT6|1|1|G|299
*
7BT6|1|1|U|316
7BT6|1|1|A|317
7BT6|1|1|A|318
7BT6|1|1|A|319

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A

Chain i

60S ribosomal protein L36-A