J5_7BT6_007
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- GAAAGAAGAC*GAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUUACC
- Length
- 66 nucleotides
- Bulged bases
- 7BT6|1|1|A|2397, 7BT6|1|1|U|2818, 7BT6|1|1|U|2822, 7BT6|1|1|G|2823, 7BT6|1|1|G|2824, 7BT6|1|1|G|2828, 7BT6|1|1|U|2829, 7BT6|1|1|U|2859, 7BT6|1|1|U|2860, 7BT6|1|1|U|2861, 7BT6|1|1|U|2862, 7BT6|1|1|G|2863, 7BT6|1|1|A|2864, 7BT6|1|1|U|2865, 7BT6|1|1|U|2866, 7BT6|1|1|C|2867, 7BT6|1|1|U|2869, 7BT6|1|1|G|2871, 7BT6|1|1|A|2872, 7BT6|1|1|U|2978, 7BT6|1|1|U|2979, 7BT6|1|1|U|2980, 7BT6|1|1|U|2981, 7BT6|1|1|C|2983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7BT6|1|1|G|2396
7BT6|1|1|A|2397
7BT6|1|1|A|2398
7BT6|1|1|A|2399
7BT6|1|1|G|2400
7BT6|1|1|A|2401
7BT6|1|1|A|2402
7BT6|1|1|G|2403
7BT6|1|1|A|2404
7BT6|1|1|C|2405
*
7BT6|1|1|G|2816
7BT6|1|1|A|2817
7BT6|1|1|U|2818
7BT6|1|1|A|2819
7BT6|1|1|A|2820
7BT6|1|1|C|2821
7BT6|1|1|U|2822
7BT6|1|1|G|2823
7BT6|1|1|G|2824
7BT6|1|1|C|2825
7BT6|1|1|U|2826
7BT6|1|1|U|2827
7BT6|1|1|G|2828
7BT6|1|1|U|2829
7BT6|1|1|G|2830
7BT6|1|1|G|2831
7BT6|1|1|C|2832
*
7BT6|1|1|G|2856
7BT6|1|1|C|2857
7BT6|1|1|U|2858
7BT6|1|1|U|2859
7BT6|1|1|U|2860
7BT6|1|1|U|2861
7BT6|1|1|U|2862
7BT6|1|1|G|2863
7BT6|1|1|A|2864
7BT6|1|1|U|2865
7BT6|1|1|U|2866
7BT6|1|1|C|2867
7BT6|1|1|U|2868
7BT6|1|1|U|2869
7BT6|1|1|C|2870
7BT6|1|1|G|2871
7BT6|1|1|A|2872
7BT6|1|1|U|2873
7BT6|1|1|G|2874
7BT6|1|1|U|2875
7BT6|1|1|C|2876
*
7BT6|1|1|G|2950
7BT6|1|1|G|2951
7BT6|1|1|G|2952
7BT6|1|1|U|2953
7BT6|1|1|U|2954
7BT6|1|1|U|2955
7BT6|1|1|A|2956
7BT6|1|1|G|2957
*
7BT6|1|1|U|2975
7BT6|1|1|A|2976
7BT6|1|1|G|2977
7BT6|1|1|U|2978
7BT6|1|1|U|2979
7BT6|1|1|U|2980
7BT6|1|1|U|2981
7BT6|1|1|A|2982
7BT6|1|1|C|2983
7BT6|1|1|C|2984
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain x
- Ribosome assembly protein 4
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