J5_7BV8_004

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7BV8|1|A|U|1758, 7BV8|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BV8_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0752

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BV8|1|A|G|1674
7BV8|1|A|C|1675
7BV8|1|A|A|1676
7BV8|1|A|A|1677
7BV8|1|A|A|1678
7BV8|1|A|A|1679
7BV8|1|A|U|1680
7BV8|1|A|G|1681
7BV8|1|A|G|1682
*
7BV8|1|A|C|1706
7BV8|1|A|G|1707
*
7BV8|1|A|U|1751
7BV8|1|A|C|1752
*
7BV8|1|A|G|1756
7BV8|1|A|A|1757
7BV8|1|A|U|1758
7BV8|1|A|A|1759
7BV8|1|A|C|1760
7BV8|1|A|C|1761
7BV8|1|A|A|1762
7BV8|1|A|G|1763
7BV8|1|A|C|1764
*
7BV8|1|A|G|1988
7BV8|1|A|G|1989
7BV8|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19