Loop J5_7CPU

3D structure

PDB id: 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 80S ribosome from mouse kidney
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 7CPU|1|L5|A|3565, 7CPU|1|L5|A|4047, 7CPU|1|L5|U|4103, 7CPU|1|L5|G|4104, 7CPU|1|L5|U|4208, 7CPU|1|L5|U|4209
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7CPU|1|L5|A|3559
7CPU|1|L5|A|3560
7CPU|1|L5|G|3561
7CPU|1|L5|A|3562
7CPU|1|L5|A|3563
7CPU|1|L5|G|3564
7CPU|1|L5|A|3565
7CPU|1|L5|C|3566
7CPU|1|L5|C|3567
*
7CPU|1|L5|G|4045
7CPU|1|L5|G|4046
7CPU|1|L5|A|4047
7CPU|1|L5|U|4048
7CPU|1|L5|A|4049
7CPU|1|L5|A|4050
7CPU|1|L5|C|4051
7CPU|1|L5|U|4052
7CPU|1|L5|G|4053
*
7CPU|1|L5|C|4097
7CPU|1|L5|U|4098
7CPU|1|L5|U|4099
7CPU|1|L5|C|4100
7CPU|1|L5|G|4101
7CPU|1|L5|A|4102
7CPU|1|L5|U|4103
7CPU|1|L5|G|4104
7CPU|1|L5|U|4105
7CPU|1|L5|C|4106
*
7CPU|1|L5|G|4181
7CPU|1|L5|G|4182
7CPU|1|L5|U|4183
7CPU|1|L5|U|4184
7CPU|1|L5|U|4185
7CPU|1|L5|A|4186
7CPU|1|L5|G|4187
*
7CPU|1|L5|U|4205
7CPU|1|L5|A|4206
7CPU|1|L5|G|4207
7CPU|1|L5|U|4208
7CPU|1|L5|U|4209
7CPU|1|L5|U|4210
7CPU|1|L5|U|4211

Current chains

Chain L5: Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain La: 60S ribosomal protein L27a
Chain Lb: 60S ribosomal protein L29

J5_7CPU_004