J5_7D5S_001
3D structure
- PDB id
- 7D5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAAAAGAGC*GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG
- Length
- 55 nucleotides
- Bulged bases
- 7D5S|1|5A|U|294, 7D5S|1|5A|A|295, 7D5S|1|5A|C|296, 7D5S|1|5A|U|297, 7D5S|1|5A|A|298, 7D5S|1|5A|A|309, 7D5S|1|5A|A|313, 7D5S|1|5A|A|322, 7D5S|1|5A|A|329, 7D5S|1|5A|C|330, 7D5S|1|5A|U|331, 7D5S|1|5A|U|332, 7D5S|1|5A|A|396, 7D5S|1|5A|A|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D5S|1|3A|C|54
7D5S|1|3A|A|55
7D5S|1|3A|A|56
7D5S|1|3A|A|57
7D5S|1|3A|A|58
7D5S|1|3A|G|59
7D5S|1|3A|A|60
7D5S|1|3A|G|61
7D5S|1|3A|C|62
*
7D5S|1|5A|G|291
7D5S|1|5A|A|292
7D5S|1|5A|U|293
7D5S|1|5A|U|294
7D5S|1|5A|A|295
7D5S|1|5A|C|296
7D5S|1|5A|U|297
7D5S|1|5A|A|298
7D5S|1|5A|G|299
*
7D5S|1|5A|C|307
7D5S|1|5A|A|308
7D5S|1|5A|A|309
7D5S|1|5A|U|310
7D5S|1|5A|C|311
7D5S|1|5A|U|312
7D5S|1|5A|A|313
7D5S|1|5A|U|314
7D5S|1|5A|U|315
7D5S|1|5A|U|316
7D5S|1|5A|C|317
7D5S|1|5A|A|318
7D5S|1|5A|A|319
7D5S|1|5A|A|320
7D5S|1|5A|G|321
7D5S|1|5A|A|322
7D5S|1|5A|A|323
7D5S|1|5A|U|324
7D5S|1|5A|U|325
7D5S|1|5A|C|326
7D5S|1|5A|A|327
7D5S|1|5A|A|328
7D5S|1|5A|A|329
7D5S|1|5A|C|330
7D5S|1|5A|U|331
7D5S|1|5A|U|332
7D5S|1|5A|G|333
*
7D5S|1|5A|C|391
7D5S|1|5A|U|392
7D5S|1|5A|C|393
7D5S|1|5A|U|394
7D5S|1|5A|C|395
7D5S|1|5A|A|396
7D5S|1|5A|A|397
*
7D5S|1|5A|U|460
7D5S|1|5A|A|461
7D5S|1|5A|G|462
Current chains
- Chain 3A
- U3 snoRNA
- Chain 5A
- 5' ETS
Nearby chains
- Chain 3E
- Nucleolar protein 58
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5F
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain 5K
- rRNA-processing protein FCF1
- Chain B1
- Periodic tryptophan protein 2
- Chain B8
- U3 small nucleolar RNA-associated protein 18
- Chain BE
- U3 small nucleolar RNA-associated protein 21
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RQ
- U3 small nucleolar RNA-associated protein 14
Coloring options: