J5_7D5S_003

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

39 nucleotides

Bulged bases

7D5S|1|SA|G|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D5S|1|SA|C|31
7D5S|1|SA|U|32
7D5S|1|SA|U|33
7D5S|1|SA|G|34
7D5S|1|SA|U|35
7D5S|1|SA|C|36
7D5S|1|SA|U|37
*
7D5S|1|SA|A|471
7D5S|1|SA|U|472
7D5S|1|SA|A|473
7D5S|1|SA|A|474
7D5S|1|SA|A|475
7D5S|1|SA|U|476
7D5S|1|SA|A|477
7D5S|1|SA|A|478
7D5S|1|SA|C|479
*
7D5S|1|SA|G|509
7D5S|1|SA|G|510
7D5S|1|SA|A|511
7D5S|1|SA|A|512
7D5S|1|SA|U|513
7D5S|1|SA|G|514
7D5S|1|SA|A|515
7D5S|1|SA|G|516
*
7D5S|1|SA|C|536
7D5S|1|SA|G|537
7D5S|1|SA|A|538
7D5S|1|SA|G|539
7D5S|1|SA|G|540
7D5S|1|SA|A|541
7D5S|1|SA|A|542
7D5S|1|SA|C|543
7D5S|1|SA|A|544
7D5S|1|SA|A|545
7D5S|1|SA|U|546
*
7D5S|1|SA|A|592
7D5S|1|SA|U|593
7D5S|1|SA|A|594
7D5S|1|SA|G|595

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S23-A