Loop J5_7D5T

3D structure

PDB id: 7D5T (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 7D5T|1|SA|G|127, 7D5T|1|SA|U|132, 7D5T|1|SA|U|133, 7D5T|1|SA|U|134, 7D5T|1|SA|A|135, 7D5T|1|SA|A|140, 7D5T|1|SA|U|141, 7D5T|1|SA|U|178, 7D5T|1|SA|A|179
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7D5T|1|SA|A|124
7D5T|1|SA|U|125
7D5T|1|SA|A|126
7D5T|1|SA|G|127
7D5T|1|SA|U|128
7D5T|1|SA|U|129
7D5T|1|SA|C|130
7D5T|1|SA|C|131
7D5T|1|SA|U|132
7D5T|1|SA|U|133
7D5T|1|SA|U|134
7D5T|1|SA|A|135
7D5T|1|SA|C|136
7D5T|1|SA|U|137
7D5T|1|SA|A|138
7D5T|1|SA|C|139
7D5T|1|SA|A|140
7D5T|1|SA|U|141
7D5T|1|SA|G|142
7D5T|1|SA|G|143
*
7D5T|1|SA|C|172
7D5T|1|SA|A|173
7D5T|1|SA|U|174
7D5T|1|SA|G|175
7D5T|1|SA|C|176
7D5T|1|SA|U|177
7D5T|1|SA|U|178
7D5T|1|SA|A|179
7D5T|1|SA|A|180
7D5T|1|SA|A|181
7D5T|1|SA|A|182
*
7D5T|1|SA|U|203
7D5T|1|SA|G|204
*
7D5T|1|SA|C|263
7D5T|1|SA|G|264
7D5T|1|SA|A|265
*
7D5T|1|SA|U|289
7D5T|1|SA|G|290
7D5T|1|SA|G|291
7D5T|1|SA|U|292
7D5T|1|SA|U|293

Current chains

Chain SA: 18S rRNA

Nearby chains

Chain RP: U3 small nucleolar RNA-associated protein 20
Chain SF: 40S ribosomal protein S4-A
Chain SH: 40S ribosomal protein S6-A
Chain SJ: 40S ribosomal protein S8-A

J5_7D5T_002