3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
Length
39 nucleotides
Bulged bases
7D63|1|SA|G|539
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7D63|1|SA|C|31
7D63|1|SA|U|32
7D63|1|SA|U|33
7D63|1|SA|G|34
7D63|1|SA|U|35
7D63|1|SA|C|36
7D63|1|SA|U|37
*
7D63|1|SA|A|471
7D63|1|SA|U|472
7D63|1|SA|A|473
7D63|1|SA|A|474
7D63|1|SA|A|475
7D63|1|SA|U|476
7D63|1|SA|A|477
7D63|1|SA|A|478
7D63|1|SA|C|479
*
7D63|1|SA|G|509
7D63|1|SA|G|510
7D63|1|SA|A|511
7D63|1|SA|A|512
7D63|1|SA|U|513
7D63|1|SA|G|514
7D63|1|SA|A|515
7D63|1|SA|G|516
*
7D63|1|SA|C|536
7D63|1|SA|G|537
7D63|1|SA|A|538
7D63|1|SA|G|539
7D63|1|SA|G|540
7D63|1|SA|A|541
7D63|1|SA|A|542
7D63|1|SA|C|543
7D63|1|SA|A|544
7D63|1|SA|A|545
7D63|1|SA|U|546
*
7D63|1|SA|A|592
7D63|1|SA|U|593
7D63|1|SA|A|594
7D63|1|SA|G|595

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5H
Something about silencing protein 10
Chain RB
U3 small nucleolar ribonucleoprotein protein LCP5
Chain RJ
Ribosome biogenesis protein BMS1
Chain SK
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S23-A

Coloring options:

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