J5_7D6Z_004
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 7D6Z|1|A|U|1758, 7D6Z|1|A|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7D6Z_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0716
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7D6Z|1|A|G|1674
7D6Z|1|A|C|1675
7D6Z|1|A|A|1676
7D6Z|1|A|A|1677
7D6Z|1|A|A|1678
7D6Z|1|A|A|1679
7D6Z|1|A|U|1680
7D6Z|1|A|G|1681
7D6Z|1|A|G|1682
*
7D6Z|1|A|C|1706
7D6Z|1|A|G|1707
*
7D6Z|1|A|U|1751
7D6Z|1|A|C|1752
*
7D6Z|1|A|G|1756
7D6Z|1|A|A|1757
7D6Z|1|A|U|1758
7D6Z|1|A|A|1759
7D6Z|1|A|C|1760
7D6Z|1|A|C|1761
7D6Z|1|A|A|1762
7D6Z|1|A|G|1763
7D6Z|1|A|C|1764
*
7D6Z|1|A|G|1988
7D6Z|1|A|G|1989
7D6Z|1|A|C|1990
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain f
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: