J5_7D6Z_008
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7D6Z|1|f|A|109, 7D6Z|1|f|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7D6Z_008 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1099
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D6Z|1|f|C|58
7D6Z|1|f|A|59
7D6Z|1|f|A|60
7D6Z|1|f|G|61
*
7D6Z|1|f|C|106
7D6Z|1|f|G|107
7D6Z|1|f|G|108
7D6Z|1|f|A|109
7D6Z|1|f|C|110
7D6Z|1|f|G|111
7D6Z|1|f|G|112
7D6Z|1|f|G|113
*
7D6Z|1|f|C|314
7D6Z|1|f|A|315
7D6Z|1|f|C|316
*
7D6Z|1|f|G|337
7D6Z|1|f|A|338
7D6Z|1|f|C|339
*
7D6Z|1|f|G|350
7D6Z|1|f|G|351
7D6Z|1|f|C|352
7D6Z|1|f|A|353
7D6Z|1|f|G|354
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 0
- 30S ribosomal protein S20
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain w
- 30S ribosomal protein S16
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