J5_7D80_002
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAGUGGGAG*UGACUGCGUAC*GGU*ACA*UG
- Length
- 28 nucleotides
- Bulged bases
- 7D80|1|A|A|532, 7D80|1|A|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D80|1|A|C|531
7D80|1|A|A|532
7D80|1|A|G|533
7D80|1|A|U|534
7D80|1|A|G|535
7D80|1|A|G|536
7D80|1|A|G|537
7D80|1|A|A|538
7D80|1|A|G|539
*
7D80|1|A|U|554
7D80|1|A|G|555
7D80|1|A|A|556
7D80|1|A|C|557
7D80|1|A|U|558
7D80|1|A|G|559
7D80|1|A|C|560
7D80|1|A|G|561
7D80|1|A|U|562
7D80|1|A|A|563
7D80|1|A|C|564
*
7D80|1|A|G|578
7D80|1|A|G|579
7D80|1|A|U|580
*
7D80|1|A|A|1260
7D80|1|A|C|1261
7D80|1|A|A|1262
*
7D80|1|A|U|2017
7D80|1|A|G|2018
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
Coloring options: