J5_7D80_003
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAGCGACUU*AGACCCG*CUGGUUC*GCGUU*AAGUGCGAAUGCUG
- Length
- 42 nucleotides
- Bulged bases
- 7D80|1|A|G|1248, 7D80|1|A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D80|1|A|C|581
7D80|1|A|A|582
7D80|1|A|G|583
7D80|1|A|C|584
7D80|1|A|G|585
7D80|1|A|A|586
7D80|1|A|C|587
7D80|1|A|U|588
7D80|1|A|U|589
*
7D80|1|A|A|668
7D80|1|A|G|669
7D80|1|A|A|670
7D80|1|A|C|671
7D80|1|A|C|672
7D80|1|A|C|673
7D80|1|A|G|674
*
7D80|1|A|C|806
7D80|1|A|U|807
7D80|1|A|G|808
7D80|1|A|G|809
7D80|1|A|U|810
7D80|1|A|U|811
7D80|1|A|C|812
*
7D80|1|A|G|1195
7D80|1|A|C|1196
7D80|1|A|G|1197
7D80|1|A|U|1198
7D80|1|A|U|1199
*
7D80|1|A|A|1246
7D80|1|A|A|1247
7D80|1|A|G|1248
7D80|1|A|U|1249
7D80|1|A|G|1250
7D80|1|A|C|1251
7D80|1|A|G|1252
7D80|1|A|A|1253
7D80|1|A|A|1254
7D80|1|A|U|1255
7D80|1|A|G|1256
7D80|1|A|C|1257
7D80|1|A|U|1258
7D80|1|A|G|1259
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
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