Loop J5_7D80

3D structure

PDB id: 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: GGGUUCCUGUC*GGCAGGGUGAGUCGACCC*GGAAAC*GUACU*AAUCGUACC
Length: 49 nucleotides
Bulged bases: 7D80|1|A|G|1341, 7D80|1|A|C|1604
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7D80|1|A|G|1309
7D80|1|A|G|1310
7D80|1|A|G|1311
7D80|1|A|U|1312
7D80|1|A|U|1313
7D80|1|A|C|1314
7D80|1|A|C|1315
7D80|1|A|U|1316
7D80|1|A|G|1317
7D80|1|A|U|1318
7D80|1|A|C|1319
*
7D80|1|A|G|1333
7D80|1|A|G|1334
7D80|1|A|C|1335
7D80|1|A|A|1336
7D80|1|A|G|1337
7D80|1|A|G|1338
7D80|1|A|G|1339
7D80|1|A|U|1340
7D80|1|A|G|1341
7D80|1|A|A|1342
7D80|1|A|G|1343
7D80|1|A|U|1344
7D80|1|A|C|1345
7D80|1|A|G|1346
7D80|1|A|A|1347
7D80|1|A|C|1348
7D80|1|A|C|1349
7D80|1|A|C|1350
*
7D80|1|A|G|1381
7D80|1|A|G|1382
7D80|1|A|A|1383
7D80|1|A|A|1384
7D80|1|A|A|1385
7D80|1|A|C|1386
*
7D80|1|A|G|1401
7D80|1|A|U|1402
7D80|1|A|A|1403
7D80|1|A|C|1404
7D80|1|A|U|1405
*
7D80|1|A|A|1597
7D80|1|A|A|1598
7D80|1|A|U|1599
7D80|1|A|C|1600
7D80|1|A|G|1601
7D80|1|A|U|1602
7D80|1|A|A|1603
7D80|1|A|C|1604
7D80|1|A|C|1605

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L34
Chain 5: Trigger factor
Chain W: 50S ribosomal protein L23

J5_7D80_004