J5_7DUI_002
3D structure
- PDB id
- 7DUI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7DUI|1|A|A|109, 7DUI|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7DUI_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0627
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7DUI|1|A|C|58
7DUI|1|A|A|59
7DUI|1|A|A|60
7DUI|1|A|G|61
*
7DUI|1|A|C|106
7DUI|1|A|G|107
7DUI|1|A|G|108
7DUI|1|A|A|109
7DUI|1|A|C|110
7DUI|1|A|G|111
7DUI|1|A|G|112
7DUI|1|A|G|113
*
7DUI|1|A|C|314
7DUI|1|A|A|315
7DUI|1|A|G|316
*
7DUI|1|A|C|337
7DUI|1|A|A|338
7DUI|1|A|C|339
*
7DUI|1|A|G|350
7DUI|1|A|G|351
7DUI|1|A|C|352
7DUI|1|A|A|353
7DUI|1|A|G|354
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: