J5_7F0D_002

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCCGCC*GGUAAG

Length

37 nucleotides

Bulged bases

7F0D|1|A|U|319, 7F0D|1|A|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F0D|1|A|C|270
7F0D|1|A|U|271
7F0D|1|A|A|272
7F0D|1|A|A|273
7F0D|1|A|A|274
7F0D|1|A|C|275
*
7F0D|1|A|G|313
7F0D|1|A|G|314
7F0D|1|A|G|315
7F0D|1|A|U|316
7F0D|1|A|U|317
7F0D|1|A|G|318
7F0D|1|A|U|319
7F0D|1|A|G|320
*
7F0D|1|A|C|458
7F0D|1|A|G|459
7F0D|1|A|A|460
7F0D|1|A|G|461
7F0D|1|A|U|462
7F0D|1|A|A|463
7F0D|1|A|G|464
*
7F0D|1|A|U|488
7F0D|1|A|G|489
7F0D|1|A|A|490
7F0D|1|A|A|491
7F0D|1|A|U|492
7F0D|1|A|C|493
7F0D|1|A|C|494
7F0D|1|A|G|495
7F0D|1|A|C|496
7F0D|1|A|C|497
*
7F0D|1|A|G|508
7F0D|1|A|G|509
7F0D|1|A|U|510
7F0D|1|A|A|511
7F0D|1|A|A|512
7F0D|1|A|G|513

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28