J5_7JQB_004

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

7JQB|1|A|G|126, 7JQB|1|A|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQB|1|A|G|123
7JQB|1|A|U|124
7JQB|1|A|C|125
7JQB|1|A|G|126
7JQB|1|A|C|127
7JQB|1|A|U|128
7JQB|1|A|C|129
7JQB|1|A|G|130
*
7JQB|1|A|C|182
7JQB|1|A|G|183
7JQB|1|A|G|184
7JQB|1|A|G|185
*
7JQB|1|A|U|214
7JQB|1|A|G|215
*
7JQB|1|A|C|310
7JQB|1|A|C|311
7JQB|1|A|G|312
*
7JQB|1|A|C|337
7JQB|1|A|G|338
7JQB|1|A|A|339
7JQB|1|A|C|340
7JQB|1|A|C|341

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain J

eS8

Chain M

40S ribosomal protein S4