3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7JSS|1|1|U|1758, 7JSS|1|1|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7JSS_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.1057
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7JSS|1|1|G|1674
7JSS|1|1|C|1675
7JSS|1|1|A|1676
7JSS|1|1|A|1677
7JSS|1|1|A|1678
7JSS|1|1|A|1679
7JSS|1|1|U|1680
7JSS|1|1|G|1681
7JSS|1|1|G|1682
*
7JSS|1|1|C|1706
7JSS|1|1|G|1707
*
7JSS|1|1|U|1751
7JSS|1|1|C|1752
*
7JSS|1|1|G|1756
7JSS|1|1|A|1757
7JSS|1|1|U|1758
7JSS|1|1|A|1759
7JSS|1|1|C|1760
7JSS|1|1|C|1761
7JSS|1|1|A|1762
7JSS|1|1|G|1763
7JSS|1|1|C|1764
*
7JSS|1|1|G|1988
7JSS|1|1|G|1989
7JSS|1|1|C|1990

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14
Chain p
50S ribosomal protein L19

Coloring options:


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