J5_7JSW_001

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JSW|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JSW_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1328

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JSW|1|1|C|47
7JSW|1|1|G|48
7JSW|1|1|A|49
7JSW|1|1|U|50
7JSW|1|1|G|51
7JSW|1|1|A|52
7JSW|1|1|A|53
7JSW|1|1|G|54
*
7JSW|1|1|C|116
7JSW|1|1|G|117
7JSW|1|1|A|118
7JSW|1|1|A|119
7JSW|1|1|U|120
7JSW|1|1|G|121
*
7JSW|1|1|C|130
7JSW|1|1|A|131
*
7JSW|1|1|U|148
7JSW|1|1|A|149
7JSW|1|1|U|150
*
7JSW|1|1|A|176
7JSW|1|1|G|177
7JSW|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34