J5_7JT3_001

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7JT3|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JT3_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1146

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JT3|1|1|C|47
7JT3|1|1|G|48
7JT3|1|1|A|49
7JT3|1|1|U|50
7JT3|1|1|G|51
7JT3|1|1|A|52
7JT3|1|1|A|53
7JT3|1|1|G|54
*
7JT3|1|1|C|116
7JT3|1|1|G|117
7JT3|1|1|A|118
7JT3|1|1|A|119
7JT3|1|1|U|120
7JT3|1|1|G|121
*
7JT3|1|1|C|130
7JT3|1|1|A|131
*
7JT3|1|1|U|148
7JT3|1|1|A|149
7JT3|1|1|U|150
*
7JT3|1|1|A|176
7JT3|1|1|G|177
7JT3|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34