3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
7JT3|1|1|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7JT3_003 not in the Motif Atlas
Homologous match to J5_7A0S_004
Geometric discrepancy: 0.084
The information below is about J5_7A0S_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.6
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

7JT3|1|1|C|584
7JT3|1|1|G|585
7JT3|1|1|A|586
7JT3|1|1|C|587
7JT3|1|1|U|588
7JT3|1|1|U|589
*
7JT3|1|1|A|668
7JT3|1|1|G|669
7JT3|1|1|A|670
7JT3|1|1|C|671
*
7JT3|1|1|G|809
7JT3|1|1|U|810
7JT3|1|1|U|811
7JT3|1|1|C|812
*
7JT3|1|1|G|1195
7JT3|1|1|C|1196
*
7JT3|1|1|G|1250
7JT3|1|1|C|1251
7JT3|1|1|G|1252
7JT3|1|1|A|1253
7JT3|1|1|A|1254
7JT3|1|1|U|1255
7JT3|1|1|G|1256

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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