3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7K00|1|a|U|1758, 7K00|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7K00_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0359
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7K00|1|a|G|1674
7K00|1|a|C|1675
7K00|1|a|A|1676
7K00|1|a|A|1677
7K00|1|a|A|1678
7K00|1|a|A|1679
7K00|1|a|U|1680
7K00|1|a|G|1681
7K00|1|a|G|1682
*
7K00|1|a|C|1706
7K00|1|a|G|1707
*
7K00|1|a|U|1751
7K00|1|a|C|1752
*
7K00|1|a|G|1756
7K00|1|a|A|1757
7K00|1|a|U|1758
7K00|1|a|A|1759
7K00|1|a|C|1760
7K00|1|a|C|1761
7K00|1|a|A|1762
7K00|1|a|G|1763
7K00|1|a|C|1764
*
7K00|1|a|G|1988
7K00|1|a|G|1989
7K00|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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