J5_7K52_004

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7K52|1|1|U|1758, 7K52|1|1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7K52_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0915

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7K52|1|1|G|1674
7K52|1|1|C|1675
7K52|1|1|A|1676
7K52|1|1|A|1677
7K52|1|1|A|1678
7K52|1|1|A|1679
7K52|1|1|U|1680
7K52|1|1|G|1681
7K52|1|1|G|1682
*
7K52|1|1|C|1706
7K52|1|1|G|1707
*
7K52|1|1|U|1751
7K52|1|1|C|1752
*
7K52|1|1|G|1756
7K52|1|1|A|1757
7K52|1|1|U|1758
7K52|1|1|A|1759
7K52|1|1|C|1760
7K52|1|1|C|1761
7K52|1|1|A|1762
7K52|1|1|G|1763
7K52|1|1|C|1764
*
7K52|1|1|G|1988
7K52|1|1|G|1989
7K52|1|1|C|1990

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19