J5_7KGB_006
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAAAUGC*GA*UC*GAAACCAGU*AAC
- Length
- 25 nucleotides
- Bulged bases
- 7KGB|1|A|A|1992, 7KGB|1|A|G|1997
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7KGB_006 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.188
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7KGB|1|A|G|1909
7KGB|1|A|C|1910
7KGB|1|A|A|1911
7KGB|1|A|A|1912
7KGB|1|A|A|1913
7KGB|1|A|A|1914
7KGB|1|A|U|1915
7KGB|1|A|G|1916
7KGB|1|A|C|1917
*
7KGB|1|A|G|1941
7KGB|1|A|A|1942
*
7KGB|1|A|U|1985
7KGB|1|A|C|1986
*
7KGB|1|A|G|1990
7KGB|1|A|A|1991
7KGB|1|A|A|1992
7KGB|1|A|A|1993
7KGB|1|A|C|1994
7KGB|1|A|C|1995
7KGB|1|A|A|1996
7KGB|1|A|G|1997
7KGB|1|A|U|1998
*
7KGB|1|A|A|2226
7KGB|1|A|A|2227
7KGB|1|A|C|2228
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: