J5_7KGB_008
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7KGB|1|A|C|2313, 7KGB|1|A|G|2666, 7KGB|1|A|G|2667, 7KGB|1|A|A|2668, 7KGB|1|A|U|2669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7KGB_008 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0929
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7KGB|1|A|U|2311
7KGB|1|A|U|2312
7KGB|1|A|C|2313
7KGB|1|A|A|2314
*
7KGB|1|A|U|2481
7KGB|1|A|U|2482
7KGB|1|A|U|2483
7KGB|1|A|A|2484
*
7KGB|1|A|U|2496
7KGB|1|A|G|2497
*
7KGB|1|A|C|2519
7KGB|1|A|G|2520
*
7KGB|1|A|C|2665
7KGB|1|A|G|2666
7KGB|1|A|G|2667
7KGB|1|A|A|2668
7KGB|1|A|U|2669
7KGB|1|A|A|2670
7KGB|1|A|A|2671
7KGB|1|A|A|2672
7KGB|1|A|A|2673
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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