J5_7LH5_018

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7LH5_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1051

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7LH5|1|CA|C|36
7LH5|1|CA|U|37
7LH5|1|CA|G|38
7LH5|1|CA|G|39
*
7LH5|1|CA|C|403
7LH5|1|CA|U|404
7LH5|1|CA|U|405
7LH5|1|CA|G|406
*
7LH5|1|CA|C|436
7LH5|1|CA|U|437
7LH5|1|CA|G|438
7LH5|1|CA|A|439
7LH5|1|CA|A|441
7LH5|1|CA|C|442
*
7LH5|1|CA|G|492
7LH5|1|CA|G|493
7LH5|1|CA|U|494
7LH5|1|CA|A|495
7LH5|1|CA|A|496
7LH5|1|CA|U|498
7LH5|1|CA|A|499
7LH5|1|CA|G|500
*
7LH5|1|CA|C|545
7LH5|1|CA|G|546
7LH5|1|CA|A|547
7LH5|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12