J5_7LS1_002
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 7LS1|1|A2|C|2044, 7LS1|1|A2|U|2105
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7LS1_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1025
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS1|1|A2|G|1149
7LS1|1|A2|G|1150
7LS1|1|A2|A|1151
7LS1|1|A2|G|1152
7LS1|1|A2|U|1153
7LS1|1|A2|C|1154
*
7LS1|1|A2|G|1329
7LS1|1|A2|2MG|1330
7LS1|1|A2|A|1331
7LS1|1|A2|C|1332
*
7LS1|1|A2|G|1471
7LS1|1|A2|I4U|1472
7LS1|1|A2|U|1473
7LS1|1|A2|C|1474
*
7LS1|1|A2|G|2043
7LS1|1|A2|C|2044
7LS1|1|A2|C|2045
*
7LS1|1|A2|G|2100
7LS1|1|A2|C|2101
7LS1|1|A2|A|2102
7LS1|1|A2|G|2103
7LS1|1|A2|A|2104
7LS1|1|A2|U|2105
7LS1|1|A2|C|2106
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain U2
- 60S ribosomal protein L27a
- Chain Y2
- 60S ribosomal protein L32
- Chain k2
- 60S ribosomal protein L28
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