J5_7LV0_004

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7LV0|1|1|U|1758, 7LV0|1|1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7LV0_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0887

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7LV0|1|1|G|1674
7LV0|1|1|C|1675
7LV0|1|1|A|1676
7LV0|1|1|A|1677
7LV0|1|1|A|1678
7LV0|1|1|A|1679
7LV0|1|1|U|1680
7LV0|1|1|G|1681
7LV0|1|1|G|1682
*
7LV0|1|1|C|1706
7LV0|1|1|G|1707
*
7LV0|1|1|U|1751
7LV0|1|1|C|1752
*
7LV0|1|1|G|1756
7LV0|1|1|A|1757
7LV0|1|1|U|1758
7LV0|1|1|A|1759
7LV0|1|1|C|1760
7LV0|1|1|C|1761
7LV0|1|1|A|1762
7LV0|1|1|G|1763
7LV0|1|1|C|1764
*
7LV0|1|1|G|1988
7LV0|1|1|G|1989
7LV0|1|1|C|1990

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19