J5_7LVK_004

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7LVK|1|I|U|1758, 7LVK|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7LVK_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0529

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|G|1674
7LVK|1|I|C|1675
7LVK|1|I|A|1676
7LVK|1|I|A|1677
7LVK|1|I|A|1678
7LVK|1|I|A|1679
7LVK|1|I|U|1680
7LVK|1|I|G|1681
7LVK|1|I|G|1682
*
7LVK|1|I|C|1706
7LVK|1|I|G|1707
*
7LVK|1|I|U|1751
7LVK|1|I|C|1752
*
7LVK|1|I|G|1756
7LVK|1|I|A|1757
7LVK|1|I|U|1758
7LVK|1|I|A|1759
7LVK|1|I|C|1760
7LVK|1|I|C|1761
7LVK|1|I|A|1762
7LVK|1|I|G|1763
7LVK|1|I|C|1764
*
7LVK|1|I|G|1988
7LVK|1|I|G|1989
7LVK|1|I|C|1990

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14

Chain X

50S ribosomal protein L19